Re: [gmx-users] InflateGRO and pentamer protein simulation

2010-04-11 Thread xi zhao
Dear sir: Thank you for your help! --- 10年4月11日,周日, shaya...@post.tau.ac.il 写道: 发件人: shaya...@post.tau.ac.il 主题: Re: [gmx-users] InflateGRO and pentamer protein simulation 收件人: jalem...@vt.edu, "Discussion list for GROMACS users" 日期: 2010年4月11日,周日,下午10:01 Dear Xi Zhao, For

Re: [gmx-users] InflateGRO and pentamer protein simulation

2010-04-11 Thread shayamra
think you'll find a resolution faster that way. -Justin 4 <http://cn.webmessenger.yahoo.com/index.php?t=1&to=eWlkPXpoYW94aWl0YzIwMDI-&sig=703fa929658518b2720b087c59cd85f2dabf8844> --- *10年4月9日,周五, Justin A. Lemkul //* 写道: 发件人: Justin A. Lemkul 主题: Re

Re: [gmx-users] InflateGRO and pentamer protein simulation

2010-04-09 Thread Justin A. Lemkul
ustin A. Lemkul //* 写道: 发件人: Justin A. Lemkul 主题: Re: [gmx-users] InflateGRO and pentamer protein simulation 收件人: "Discussion list for GROMACS users" 日期: 2010年4月9日,周五,上午2:14 xi zhao wrote: > > > Dear sir : > I want to a pentam

Re: [gmx-users] InflateGRO and pentamer protein simulation

2010-04-08 Thread xi zhao
script finishes, the membrane is rescaled, but the protein is untouched in the corner of the new box. Please give me some suggestions! Thank you in  advance! > best regards! --- 10年4月9日,周五, Justin A. Lemkul 写道: 发件人: Justin A. Lemkul 主题: Re: [gmx-users] InflateGRO and pentamer prot

Re: [gmx-users] InflateGRO and pentamer protein simulation

2010-04-08 Thread Justin A. Lemkul
xi zhao wrote: Dear sir : I want to a pentamer membrane protein, when I used InflateGRO.pl with /DOUGHNUT Mode, the results were wrong, please help me! / If you want any useful help, you'll have to do a whole lot better than simply saying "the results were wrong." No one on this list wil

[gmx-users] InflateGRO and pentamer protein simulation

2010-04-08 Thread xi zhao
Dear sir : I want to a pentamer membrane protein, when I used InflateGRO.pl with DOUGHNUT Mode, the results were wrong, please help me! show " [u...@localhost protein-tutorial]$ perl inflategro.txt kkr.gro 4 POPC 14 kk_inflated.gro 5 area.dat doughnut protein_subunits Doughnut mode activated.