Re: [gmx-users] I need 256 lipids ...

Stéphane Téletchéa wrote: David van der Spoel a écrit : Stéphane Téletchéa wrote: editconf -f dppc64.pdb -o dppc64_pbc.pdb -pbc But unfortunately, some lipids are not imaged (at least 18, 25 and 53). I tried using trjconv but it needs a topol.tpr that i don't have :-( Any hint ? Stéphan

Re: [gmx-users] I need 256 lipids ...

David van der Spoel a écrit : Stéphane Téletchéa wrote: editconf -f dppc64.pdb -o dppc64_pbc.pdb -pbc But unfortunately, some lipids are not imaged (at least 18, 25 and 53). I tried using trjconv but it needs a topol.tpr that i don't have :-( Any hint ? Stéphane It requires some manual w

Re: [gmx-users] I need 256 lipids ...

Stéphane Téletchéa wrote: David van der Spoel a écrit : Stéphane Téletchéa wrote: Hello, I'm willing to simulate a membrane protein, and to gain lipid equilibration time, i'm using either Dr Tieleman's lipids or Dr Vattulainen's lipids (dppc 128 / dppc64). In order to fully surround my pro

Re: [gmx-users] I need 256 lipids ...

David van der Spoel a écrit : Stéphane Téletchéa wrote: Hello, I'm willing to simulate a membrane protein, and to gain lipid equilibration time, i'm using either Dr Tieleman's lipids or Dr Vattulainen's lipids (dppc 128 / dppc64). In order to fully surround my protein, i need to enlarge tho

Re: [gmx-users] I need 256 lipids ...

Stéphane Téletchéa wrote: Hello, I'm willing to simulate a membrane protein, and to gain lipid equilibration time, i'm using either Dr Tieleman's lipids or Dr Vattulainen's lipids (dppc 128 / dppc64). In order to fully surround my protein, i need to enlarge those boxes to get at least 256 l

[gmx-users] I need 256 lipids ...

Hello, I'm willing to simulate a membrane protein, and to gain lipid equilibration time, i'm using either Dr Tieleman's lipids or Dr Vattulainen's lipids (dppc 128 / dppc64). In order to fully surround my protein, i need to enlarge those boxes to get at least 256 lipids (thus multiply the 64