Am 05.03.2009 um 07:44 schrieb Dechang Li:
Not sure about VMD, but you can write a short script for pymol in
python:
1: reading velocities from gro
2: converting gro2pdb
3: read in pdb into pymol
4: create cgo object containing arrow (search in the list archives or
on the wiki page of pymo
Dear all,
Is there any methods to display the velocity of the atoms using
VMD? I saw that in the .gro file, it contains six columns. The last
columns are the vector of the velocity. Can I display the velocity
in VMD using arrows, with which the orientation and the magnitude
can be displayed
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