Re: [gmx-users] Help with Principal component analysis

2012-01-02 Thread Mark Abraham
On 3/01/2012 6:54 AM, Alex Jemulin wrote: Dear all I run a MD on a GPCR (transmembrane protein) Then I run a PCA on results and I found 3PC sufficient to explain variance. On the same PC I get big values for samples located both at Nter (extracellular) and Cter (intracellular) or for similar ca

[gmx-users] Help with Principal component analysis

2012-01-02 Thread Alex Jemulin
Dear all   I run a MD on a GPCR (transmembrane protein) Then I run a PCA on results and I found 3PC sufficient to explain variance. On the same PC I get big values for samples located both at Nter (extracellular) and Cter (intracellular) or for similar cases such as both Nter(extracellular) and L