Re: [gmx-users] GROMOS96 53a6 and PRODRG topologies

2012-02-14 Thread Justin A. Lemkul
xiaojiong wrote: Dear: My receptor is membrane proteins,the I get protein-ligand complex.I want to do MD simulations in DPPC.Can I use the GROMOS96 53a6 force field modified in order to include Berger’s parameters for lipids? Sure, but there are other choices, as well. The topology f

[gmx-users] GROMOS96 53a6 and PRODRG topologies

2012-02-14 Thread xiaojiong
Dear: My receptor is membrane proteins,the I get protein-ligand complex.I want to do MD simulations in DPPC.Can I use the GROMOS96 53a6 force field modified in order to include Berger’s parameters for lipids?The topology for the ligand was created employing the server PRODRG 2.5 Beta.How to