RE: [gmx-users] Fw: g_membed tool

2011-03-20 Thread Dallas Warren
Mohana lakshmi Sent: Monday, 21 March 2011 2:55 PM To: Discussion list for GROMACS users Subject: RE: [gmx-users] Fw: g_membed tool --- On Sun, 20/3/11, Dallas Warren wrote: Dear Dr. Dallas Warren Thanks for your reply. Could you please tell me in which command should i give

Re: [gmx-users] Fw: g_membed tool

2011-03-20 Thread Justin A. Lemkul
Mohana lakshmi wrote: --- On *Sun, 20/3/11, Dallas Warren //* wrote: Dear Dr. Dallas Warren Thanks for your reply. Could you please tell me in which command should i give the box dimensions There is no command. Please read g_membed -h, particularly: "Box si

RE: [gmx-users] Fw: g_membed tool

2011-03-20 Thread Mohana lakshmi
--- On Sun, 20/3/11, Dallas Warren wrote: Dear Dr. Dallas Warren     Thanks for your reply. Could you please tell me in which command should i give the box dimensions   -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Ple

RE: [gmx-users] Fw: g_membed tool

2011-03-20 Thread Dallas Warren
: gromacs users Subject: [gmx-users] Fw: g_membed tool Dear all.. I am using g_membed tools to embed the protein into lipid membrane. I read that before doing g_membed we need to run a short run with some options in .mdp files. what are the steps do we need to do before g_membed. It is given that

[gmx-users] Fw: g_membed tool

2011-03-19 Thread Mohana lakshmi
Dear all.. I am using g_membed tools to embed the protein into lipid membrane. I read that before doing g_membed we need to run a short run with some options in .mdp files. what are the steps do we need to do before g_membed. It is given that box size should be taken from the membrane str