Re: [gmx-users] Energy profile with umbrella sampling

2006-07-12 Thread Robert fiske
From: "pim schravendijk" <[EMAIL PROTECTED]> Reply-To: [EMAIL PROTECTED],Discussion list for GROMACS users To: gmx-users@gromacs.org Subject: Re: [gmx-users] Energy profile with umbrella sampling Date: Wed, 12 Jul 2006 14:30:04 +0200 On 7/11/06, [EMAIL PROTECTED] &

Re: [gmx-users] Energy profile with umbrella sampling

2006-07-12 Thread pim schravendijk
On 7/11/06, [EMAIL PROTECTED] <[EMAIL PROTECTED] > wrote:Send gmx-users mailing list submissions to gmx-users@gromacs.orgFrom: "Berk Hess" <[EMAIL PROTECTED]>Subject: Re: [gmx-users] Energy profile with umbrella sampling >From: "pim lists" < [EM

Re: [gmx-users] Energy profile with umbrella sampling

2006-07-11 Thread Berk Hess
From: "pim lists" <[EMAIL PROTECTED]> Reply-To: [EMAIL PROTECTED],Discussion list for GROMACS users To: gmx-users@gromacs.org Subject: Re: [gmx-users] Energy profile with umbrella sampling Date: Tue, 11 Jul 2006 07:48:09 +0200 On 7/10/06, [EMAIL PROTECTED] <[EMAI

Re: [gmx-users] Energy profile with umbrella sampling

2006-07-10 Thread pim lists
On 7/10/06, [EMAIL PROTECTED] <[EMAIL PROTECTED] > wrote: From: "Robert fiske" <[EMAIL PROTECTED] >Subject: [gmx-users] Energy profile with umbrella samplingWe are using umbrella sampling to observe a hydrogen transfer.  And wouldlike to analyze our results by graphing the energy against the reacti

[gmx-users] Energy profile with umbrella sampling

2006-07-10 Thread Robert fiske
We are using umbrella sampling to observe a hydrogen transfer. And would like to analyze our results by graphing the energy against the reaction coordinates, in order to see the energy profile for the transition state. Does the force constant from the umbrella sampling affect the output of g_