Re: [gmx-users] Diffusion coefficient depenting on time interval

2009-10-22 Thread David van der Spoel
Erik Marklund wrote: Hi users, I have simulated a box of NVT-water, more specifically the flexible urey-bradley-like TIPS-reparametrisation by Dang and Pettitt (1987). What I notice is that the diffusion coefficient increases when I calculate it from a longer snippet from my trajectory. If I

[gmx-users] Diffusion coefficient depenting on time interval

2009-10-22 Thread Erik Marklund
Hi users, I have simulated a box of NVT-water, more specifically the flexible urey-bradley-like TIPS-reparametrisation by Dang and Pettitt (1987). What I notice is that the diffusion coefficient increases when I calculate it from a longer snippet from my trajectory. If I use only 100 ps; star