[gmx-users] Diameter of the micelle

You first need to obtain an .xtc in which the micelle is entirely within the unit cell in every frame: http://www.gromacs.org/Documentation/How-tos/Micelle_Clustering You can then use g_gyrate to get the radius of gyration or g_rdf to get the radial distribution function from the micelle COM o

[gmx-users] Diameter of the micelle

Hi, I am working with an emulsion water/n-dodecane in a box of 29nm. I wish to know how I can to get the diameter of the micelle in the frame, then I need to measuring the average diameter of the micelle in each frame. Thanks for your help!! -- gmx-users mailing listgmx-users@gromacs.org