Re: [gmx-users] Determining which parallelization algorithm I used

2012-05-05 Thread Mark Abraham
On 6/05/2012 7:10 AM, Andrew DeYoung wrote: Hi, I think that Gromacs has two parallelization algorithms as of version 4.5: domain decomposition (the default) and particle decomposition. For my research, I am using the particle decomposition algorithm. Thus, I include the -pd switch when callin

Re: [gmx-users] Determining which parallelization algorithm I used

2012-05-05 Thread Justin A. Lemkul
On 5/5/12 5:10 PM, Andrew DeYoung wrote: Hi, I think that Gromacs has two parallelization algorithms as of version 4.5: domain decomposition (the default) and particle decomposition. For my research, I am using the particle decomposition algorithm. Thus, I include the -pd switch when calling

[gmx-users] Determining which parallelization algorithm I used

2012-05-05 Thread Andrew DeYoung
Hi, I think that Gromacs has two parallelization algorithms as of version 4.5: domain decomposition (the default) and particle decomposition. For my research, I am using the particle decomposition algorithm. Thus, I include the -pd switch when calling mdrun. However, I am worried that in one