Re: [gmx-users] Determining the energy of an individual atom

2009-08-12 Thread Mark Abraham
[gmx-users] Determining the energy of an individual atom. To: Discussion list for GROMACS users Message-ID: <4a823a10.6010...@anu.edu.au> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Darrell Koskinen wrote: Dear GROMACS Gurus, In my simulation of a graphene structure surrounded by an

[gmx-users] Determining the energy of an individual atom

2009-08-12 Thread Darrell Koskinen
hydrogen atoms and could this be impairing the adsorption on the edges? Again, your thoughts and comments are much appreciated. Darrell Date: Wed, 12 Aug 2009 07:45:11 +0200 From: David van der Spoel Subject: Re: [gmx-users] Determining the energy of an individual atom. To: Discussion list for

[gmx-users] Determining the energy of an individual atom

2009-08-12 Thread Darrell Koskinen
Subject: Re: [gmx-users] Determining the energy of an individual atom. To: Discussion list for GROMACS users Message-ID: <4a823a10.6010...@anu.edu.au> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Darrell Koskinen wrote: Dear GROMACS Gurus, In my simulation of a graphene str

Re: [gmx-users] Determining the energy of an individual atom.

2009-08-11 Thread David van der Spoel
Darrell Koskinen wrote: Dear GROMACS Gurus, In my simulation of a graphene structure surrounded by an ammonia gas, I am not seeing any adsorption of the ammonia molecules onto the surface of the graphene structure. I am wondering if the reason I am not seeing any absorption is because the grap

Re: [gmx-users] Determining the energy of an individual atom.

2009-08-11 Thread Mark Abraham
Darrell Koskinen wrote: Dear GROMACS Gurus, In my simulation of a graphene structure surrounded by an ammonia gas, I am not seeing any adsorption of the ammonia molecules onto the surface of the graphene structure. I am wondering if the reason I am not seeing any absorption is because the grap

[gmx-users] Determining the energy of an individual atom.

2009-08-11 Thread Darrell Koskinen
Dear GROMACS Gurus, In my simulation of a graphene structure surrounded by an ammonia gas, I am not seeing any adsorption of the ammonia molecules onto the surface of the graphene structure. I am wondering if the reason I am not seeing any absorption is because the graphene lattice is vibrating