Re: [gmx-users] Density Problem

The water box is about 10nm in z direction. x and y box sizes are about 3.3nm. Hui On Fri, Apr 24, 2009 at 7:17 PM, Mark Abraham wrote: > Zhang Hui wrote: > >> Dear All, >> >> I just found that there is a problem when I extract the density >> of water from my Gromacs simulations. >> >>

Re: [gmx-users] Density Problem

Zhang Hui wrote: Dear All, I just found that there is a problem when I extract the density of water from my Gromacs simulations. When I used g_density to get the water density from .trr trajectory file, the density plot looked normal. But when I used trjconv to convert the .tr

[gmx-users] Density Problem

Dear All, I just found that there is a problem when I extract the density of water from my Gromacs simulations. When I used g_density to get the water density from .trr trajectory file, the density plot looked normal. But when I used trjconv to convert the .trr to .gro file, and

[gmx-users] Density Problem

Dear All, I just found that there is a problem when I extract the density of water from my Gromacs simulations. When I used g_density to get the water density from .trr trajectory file, the density plot looked normal. But when I used trjconv to convert the .trr to .gro file, and