Re: [gmx-users] Charge calculation in Gromacs

2006-09-07 Thread Mark Abraham
> Dear All who may concern, > I have some questions for the charge calculation in Gromacs, I used > the > forcefied ffG43a1 for the protein and inhibitors. Does the charge for the > protein is the charge per residue? The charge on a residue is the sum of the charges on the (united) atoms that

[gmx-users] Charge calculation in Gromacs

2006-09-07 Thread kanin wichapong
Dear All who may concern,    I have some questions for the charge calculation in Gromacs, I used the forcefied ffG43a1 for the protein and inhibitors. Does the charge for the protein is the charge  per residue? This forcefield is just for the polar H, right? For the nonpolar H, it will merge the H