Re: [gmx-users] Can not open file: traj.xtc

2013-02-17 Thread Sabrina Kemmerer
On 02/17/2013 04:16 PM, Justin Lemkul wrote: On 2/17/13 10:11 AM, Sabrina Kemmerer wrote: Hi, the 'ls -lh' output is -rw-r--r-- 1 sabrina sabrina 32 Feb 11 19:49 c8vectors.ndx -rw-rw-r-- 1 sabrina sabrina 7.8M Jan 19 18:54 confout.gro -rw-r--r-- 1 sabrina sabrina 33 Feb 11 19:49 labelvek

Re: [gmx-users] Can not open file: traj.xtc

2013-02-17 Thread Justin Lemkul
On 2/17/13 10:11 AM, Sabrina Kemmerer wrote: Hi, the 'ls -lh' output is -rw-r--r-- 1 sabrina sabrina 32 Feb 11 19:49 c8vectors.ndx -rw-rw-r-- 1 sabrina sabrina 7.8M Jan 19 18:54 confout.gro -rw-r--r-- 1 sabrina sabrina 33 Feb 11 19:49 labelvektors.ndx -rw-r--r-- 1 sabrina sabrina 33 Feb

Re: [gmx-users] Can not open file: traj.xtc

2013-02-17 Thread Sabrina Kemmerer
Hi, the 'ls -lh' output is -rw-r--r-- 1 sabrina sabrina 32 Feb 11 19:49 c8vectors.ndx -rw-rw-r-- 1 sabrina sabrina 7.8M Jan 19 18:54 confout.gro -rw-r--r-- 1 sabrina sabrina 33 Feb 11 19:49 labelvektors.ndx -rw-r--r-- 1 sabrina sabrina 33 Feb 11 19:49 ligebene.ndx -rw-r--r-- 1 sabrina sabr

Re: [gmx-users] Can not open file: traj.xtc

2013-02-17 Thread Justin Lemkul
On 2/17/13 8:36 AM, Sabrina Kemmerer wrote: Hi Linus, sorry, I did not mention that. Yes, I tried it with the -f parameter set and without. In both cases I get the same error. Please provide us with the exact command line you used (copied and pasted directly from the terminal) as well as t

Re: [gmx-users] Can not open file: traj.xtc

2013-02-17 Thread Sabrina Kemmerer
Hi Linus, sorry, I did not mention that. Yes, I tried it with the -f parameter set and without. In both cases I get the same error. Sabrina On 02/17/2013 01:02 PM, Linus Östberg wrote: Did you set the -f parameter to point to the right file? Never used g_rotacf, but traj.xtc is the default

Re: [gmx-users] Can not open file: traj.xtc

2013-02-17 Thread Linus Östberg
Did you set the -f parameter to point to the right file? Never used g_rotacf, but traj.xtc is the default file name for the trajectory file. // Linus On Sun, Feb 17, 2013 at 12:57 PM, Sabrina Kemmerer wrote: > Hi, > > I copied the output files of my simulation on another computer and tried to >

[gmx-users] Can not open file: traj.xtc

2013-02-17 Thread Sabrina Kemmerer
Hi, I copied the output files of my simulation on another computer and tried to run g_rotacf. I already did the same calculation on the other computer using the same version of Gromacs. Everything worked fine there, but now I get the error message 'Can not open file: traj.xtc'. I checked if t