Re: [gmx-users] Axis of the box in Gromacs

If the box is periodic, then it is everywhere. mdrun makes no promises about its output being mapped to a particular box. Mark On Thu, Jul 25, 2013 at 9:56 PM, Neha wrote: > Hi everybody, > > I was wondering if you could answer a quick question I had. Where does the > axis in a box with PBC lie

[gmx-users] Axis of the box in Gromacs

Hi everybody, I was wondering if you could answer a quick question I had. Where does the axis in a box with PBC lie in Gromacs? I thought 0, 0, 0 was the corner of the box, but if that was true none of the x, y, z values for position should be negative. However in my trajectory I see a value with