Re: [gmx-users] About topology construction for Cyclic peptide

2012-09-17 Thread Mark Abraham
On 17/09/2012 11:50 AM, vidhya sankar wrote: Dear Mark, Thank you for your reply I have used the peptide FLF For that pdb2gmx construct topology successfully with -ter choosing any thing for both terminal. OK, well you can work with that topology as your templat

[gmx-users] About topology construction for Cyclic peptide

2012-09-16 Thread vidhya sankar
Dear Mark,   Thank you for your reply I have used the peptide  FLF For that  pdb2gmx construct topology successfully with -ter  choosing any thing  for both terminal. But When i Choose none with -ter for both terminal It  again shows error as follows Fatal error: There