Re: [gmx-users] About pdb2gmx for cyclic pepetide

2012-09-14 Thread Mark Abraham
On 15/09/2012 1:37 PM, vidhya sankar wrote: Dear Justin and other Gromacs users , Thank you for your previous reply Again i Have tried the option -missing when i use pdb2gmx tool i have got errror as follows My command is ./pdb2gmx_d -f 2KDQ.pdb -o 2KDQ.gro -p

[gmx-users] About pdb2gmx for cyclic pepetide

2012-09-14 Thread vidhya sankar
Dear Justin  and other Gromacs users ,     Thank you for your previous reply    Again i Have tried  the option -missing when i use pdb2gmx tool i have got errror as follows My command is ./pdb2gmx_d -f 2KDQ.pdb -o 2KDQ.gro -p 2KDQ.top  -missing -ignh -ter There is a da