Re: [gmx-users] About g_traj, plotting displacement

Kiwoong Kim wrote: Hi, I'm trying to plot the displacements in z-coordinate of each particle belonging to some index group using g_traj. I typed below thing in prompt g_traj -f md_0_2_nvt.xtc -s md_0_2_nvt.tpr -n index_traj.ndx -nox -noy -b 0 -e 50 -ox traj -w -xvg xmgrace There are 6 a

[gmx-users] About g_traj, plotting displacement

Hi, I'm trying to plot the displacements in z-coordinate of each particle belonging to some index group using g_traj. I typed below thing in prompt g_traj -f md_0_2_nvt.xtc -s md_0_2_nvt.tpr -n index_traj.ndx -nox -noy -b 0 -e 50 -ox traj -w -xvg xmgrace There are 6 atoms in the desired index g