Re: [gmx-users] .itp file for polymer

2008-05-13 Thread Mark Abraham
David Huang wrote: hi i'm new to gromacs and am trying to construct an initial configuration for a system of polymer chains. i've looked through previous posts to the mailing list (such as the one attached below) and read chapter 5 of the gromacs manual and the wiki, but it is still not clear to

[gmx-users] .itp file for polymer

2008-05-13 Thread David Huang
hi i'm new to gromacs and am trying to construct an initial configuration for a system of polymer chains. i've looked through previous posts to the mailing list (such as the one attached below) and read chapter 5 of the gromacs manual and the wiki, but it is still not clear to me how to construct

Re: [gmx-users] .itp file for polymer (Polystyrene)

2008-03-25 Thread Rohit
Thanks Mark for guiding me. Mark Abraham <[EMAIL PROTECTED]> wrote: Rohit wrote: > Hi, > > I am trying to generate a polymer layer with 30 chains of 20 monomeric > units using gromacs' genbox command. For that, I need to have .itp file > for the single polymer chain (polystyrene). I have .itp f

Re: [gmx-users] .itp file for polymer (Polystyrene)

2008-03-25 Thread Mark Abraham
Rohit wrote: Hi, I am trying to generate a polymer layer with 30 chains of 20 monomeric units using gromacs' genbox command. For that, I need to have .itp file for the single polymer chain (polystyrene). I have .itp file for styrene molecule, how can I make a .itp file for polymer chain using

[gmx-users] .itp file for polymer (Polystyrene)

2008-03-25 Thread Rohit
Hi, I am trying to generate a polymer layer with 30 chains of 20 monomeric units using gromacs' genbox command. For that, I need to have .itp file for the single polymer chain (polystyrene). I have .itp file for styrene molecule, how can I make a .itp file for polymer chain using .itp file of s