[gmx-users] Re: gmx-users Digest, Vol 110, Issue 114

2013-06-24 Thread Raji Viswanathan
I am using Red Hat Enterprise Linux 5.5 Raji On 6/20/13 5:16 PM, "gmx-users-requ...@gromacs.org" wrote: > Send gmx-users mailing list submissions to > gmx-users@gromacs.org > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.gromacs.org/mailma

[gmx-users] Error while using genion

2013-06-20 Thread Raji Viswanathan
I am new Gromacs user and I found Dr. Kerrigan's tutorial on the spider toxin peptide. I was going through the steps in the tutorial but got stuck with the genion command. When I am prompted to select a group, I get the error that it is not found. I tried many different ways of specifying thi

[gmx-users] Running a Demo Calculation

2013-06-19 Thread Raji Viswanathan
would appreciate your help in solving this. Thanks. Raji -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe req

[gmx-users] Re: vaccum simulation error

2013-02-19 Thread raji
for vacuum simulation , no need to specify cut-offs right. am using 8x8x8 box and if we don't specify barostat it will again be a NVT simulations right. vacuum simulations can be done only in NVT ?? sorry if am wrong . please clarify this doubt thanks in advance -- View this message in context: