Re: [gmx-users] Proteins with ADP & ATP cofactors

Dear Stephan, thank you for your reply. I'm performing some test with antechamber for a de-novo parametrization, hope to see some good results with it. > You probably have to do a hand job. Look at the .itp/top files and then the force field parmeters, here's not many atoms, so it would take onl

[gmx-users] Proteins with ADP & ATP cofactors

Dear all, Does anybody have the parameters files for ATP and ADP for the AMBER03 ff? Alternatively, I know that I can find the corresponding files on the AMBER package web-site http://www.pharmacy.manchester.ac.uk/bryce/amber#cof but I don't know how convert these files so I can use them with GR