I had exactly this problem. The reason was I've edited mdp file at
Windows. Sounds silly, I know, but just do your editing for mdp at
Linux, it solved the problem for me.
Yulia Einav Ph.D.
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Beha
not match topology (topol.top, 0)
Furthemore the same part of the protein always move out of the box in different
simulations.
Is there any way to prevent the moving?
How do I continue the simulation from this point?
Thank you for your help,
Yulia
Yulia Einav Ph.D.
Mathematical Bi
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