Re: [gmx-users] divergent energy minimization results from identical starting system

2011-01-28 Thread Matt Chan
Hi Roland, Ah, the -reprod option makes everything consistent between runs now. The term 'binary reproducibility' in the help message was a bit confusing at first, but I found the wiki page on reproducibility. Thanks for your help, Matt On 01/28/2011 06:29 PM, Roland Schulz wrote: Hi, are

Re: [gmx-users] energy minimization of a charged system in vacuum

2011-01-28 Thread Matt Chan
Perfect. This is great reading. Thanks for the pointers Mark. Matt On 01/28/2011 06:50 PM, Mark Abraham wrote: On 29/01/2011 9:57 AM, Matthew Chan wrote: Hi, I'm a first time GROMACS user. I've got 2 questions, which I'll ask in separate emails. The first is about running EM on a charged p