[gmx-users] a question about make_ndx

omplish this? Best Wishes, Li Su ___ gmx-users mailing listgmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posting! Please don't post (un)subscribe req

Re: [gmx-users] a qiestion about using g_cluster

Marcus Kubitzki writes: Hi Li, first, generate an appropriate index file with make_ndx. There you can select the loops you want to analyze. Second, run g_cluster -s -f -n. Marcus Li Su wrote: Dear Sir/Madam, I am trying to use g_cluster to clusterize my protein trajectories. The proein

[gmx-users] a qiestion about using g_cluster

or c alpha or backbone and so on, all of which focus on the whole protein. I am wondering is there any way I can choose a part of the protein to clusterize? Thank you very much for your help! Best Wishes, Li Su ___ gmx-users mailing listgmx