Fw: [gmx-users] intermolecular rdfs for a bulky cation

2012-12-11 Thread Jeevapani Ha
> Hi, > > I need to calculate intermolecular rdfs b/w > P+14,6,6,6 cations. The cation has three, 6 > carbon tails ,  a 14 carbon (long) tail and a Phosphorous at the > center. > > I used nrexcl=21 in the .top file. > > I believe this job needs a lot of memory and the job dies after > some

[gmx-users] intermolecular rdfs for a bulky cation

2012-12-11 Thread Jeevapani Ha
Hi, I need to calculate intermolecular rdfs b/w atoms of P+14,6,6,6 cations on gromacs. The cation has three, 6 carbon tails , a 14 carbon (long) tail and a P at the center. I used nrexcl=21 in the .top file. I believe this job needs a lot memory and the job dies after some time. 1) How ca