Re: [gmx-users] trjcat skipping frames

2010-07-30 Thread Jared James Thompson
The old information is given below. I haven't chopped into the code yet to see if Berk's fix is there. http://www.mail-archive.com/gmx-users@gromacs.org/msg14689.html ~j Quoting "Justin A. Lemkul" : > > > Jared James Thompson wrote: > > Hi All, > &

[gmx-users] trjcat skipping frames

2010-07-29 Thread Jared James Thompson
ared Thompson -- Jared James Thompson Department of Medicinal Chemistry and Molecular Pharmacology Laboratory for Computational Drug Design and Biology RHPH 504C Heine Pharmacy Building 575 Stadium Mall Drive West Lafayette, IN 47907-2091 -- gmx-users mailing listgmx-users@gromacs.org http:/

Re: [gmx-users] coarse grain dynamics

2010-05-25 Thread Jared James Thompson
want to switch to full-atomistic representation, check which > CG > >> atom types are able to form hydrogen bonds and look for interactions > between > >> them. Obviously, this will be an approximation. > >> > >> Esteban G. Vega-Hissi > >> UNS

Re: [gmx-users] coarse grain dynamics

2010-05-25 Thread Jared James Thompson
> Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > -- Jared James Thompson Department of Medicinal Chemistry and Molecular Pharmacolo

re: [gmx-users] electro-static potential energy after minimization

2010-05-04 Thread Jared James Thompson
rface or send it to gmx-users-requ...@gromacs.org. > > > > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > > > > > ---- > > > Hotmail: Trusted email with Microsoft’s powe

Re: [gmx-users] Histrionic answers doesn't help!

2010-04-19 Thread Jared James Thompson
both an anxiolytic of any kind or > take vacations! > > Peace. > > J.M.S. > -- Jared James Thompson Department of Medicinal Chemistry and Molecular Pharmacology Laboratory for Computational Drug Design and Biology RHPH 504C Heine Pharmacy Building 575 Stadium Mall Drive West

[gmx-users] g_covar & g_anaeig problems

2010-03-25 Thread Jared James Thompson
mentation fault message or a memory error. Help? best, Jared -- Jared James Thompson Department of Medicinal Chemistry and Molecular Pharmacology Laboratory for Computational Drug Design and Biology RHPH 504C Heine Pharmacy Building 575 Stadium Mall Drive West Lafayette, IN 47907-2091 -- gm