Re: [gmx-users] energy comparison

2012-10-02 Thread Edward Deira
the system. can i do that with gromacs ? i know that computing deltaG is ***trivial*** (not the best word,i know), but what about "absolute" values? On Oct 2, 2012 7:26 PM, "Justin Lemkul" wrote: > > > On 10/2/12 12:49 PM, Edward Deira wrote: > >> Dear all, &g

[gmx-users] qmmm and "real-life" meaning of null lennard-jones parameters

2012-06-07 Thread Edward Deira
Dear all, I'm currently starting to dwell deeper in MD, and I'm taking some time to understand what's going on inside the gromacs "black-box". In one of those dwellings, I came across an older post [ http://www.mail-archive.com/gmx-users@gromacs.org/msg42568.html] which reads: Question: 4. In ffn