Re: [gmx-users] Trajectory files are too big

You can reduce the size of the trajectories after the simulation with trjconv -skip (or -dt). For a new simulation I refer to the previous suggestion. Andreas Nabajyoti Goswami wrote: Dear Gromacs Users, After a long time I am working with gromacs. Though at the starting I got some problem i

[gmx-users] Gromacs installation: cannot find LibXmu.la

On SuseLinux 10.3 the command ./configure --enable-mpi works fine but make terminates at this point. Using the option --disable-shared did not change anything. I would be grateful for any help. Many thanks Andreas Output of make: mv -f .deps/nb_free_energy.Tpo .deps/nb_free_energy.Plo /bi

[gmx-users] GROMACS AMBER DNA TERMINUS

Dear All, I am using Gromacs 3.1.1 with the AMBER port. After following the instructions on the ffamber web-page, pdb2gmx works fine. But according to point 6: "... However, for nucleic acids this also often causes pdb2gmx to replace an H atom in the first residue of all nucleic acid chains