Re: [gmx-users] rtp entry

#x27; not found!" . Any suggestions highly appreciated.. Thanks, Aj Mark Abraham <[EMAIL PROTECTED]> wrote: ASHWINI JAYAPRAKASH wrote: > Hi Mark, > > I have changed the atom name in the co-ordinate file. Now I get an error > saying : > Residue "

Re: [gmx-users] rtp entry

Aj Mark Abraham <[EMAIL PROTECTED]> wrote: ASHWINI JAYAPRAKASH wrote: > Hi Mark, > > Thank you for your valuable suggestion.I did go through the manual, but > I want to confirm if I need to add the atom CA in the ffoplsaa.rtp file, > and if so I am not sure what the app

[gmx-users] rtp entry

I choose the force field with option 0 then it gives me an error saying residue AIB not found in residue topology. Any help would be highly appreciated. Thanks, Aj Mark Abraham <[EMAIL PROTECTED]> wrote: ASHWINI JAYAPRAKASH wrote: > Hi, > > I am a new gromacs user an

[gmx-users] rtp entry

Hi, I am a new gromacs user and have problems creating a topology file using the pdb2gmx command for simulating a six helix bundled alamethecin in lipid bilayer. when I use the command : pdb2gmx -f almN6start -o almN6start.gro -p almN6start.top I get the error : Program pdb2gmx, VERSION 3.3.