[Freesurfer] Problem about Surface-based Registration

2014-03-16 Thread yufeng huang
I followed the process of creating a registration template from scratch(GW)( https://surfer.nmr.mgh.harvard.edu/fswiki/SurfaceRegAndTemplates) to do the surface-based registration. My question are as followed: 1 I want to know if I need to use the mri_cvs_registrater to replace mri_register. 2 I ch

Re: [Freesurfer] Problem about Surface-based Registration

2014-03-17 Thread yufeng huang
rs > Bruce > > > > On Sun, 16 Mar 2014, yufeng huang wrote: > > I followed the process of creating a registration template >> fromscratch(GW)(https://surfer.nmr.mgh.harvard.edu/ >> fswiki/SurfaceRegAndTemplate >> s) to do the surface-based regist

[Freesurfer] Problem about Surface-based Registration

2014-03-19 Thread yufeng huang
Dear Burce, I have 20 normal subjects, and I want to do inter-subject surface-based registration to all of them. So each one's surface can align properly to the other subject's surface. After that I can put the functional data onto the surface which has aligned to each other already. And now I

[Freesurfer] Fwd: Problem about Surface-based Registration

2014-03-19 Thread yufeng huang
on > file to map it to your new average subject. > > cheers > Bruce > > > > On Wed, 19 Mar 2014, yufeng huang wrote: > > Dear Burce, >>I have 20 normal subjects, and I want to do inter-subject surface-based >> registration to all of them. So each one's

Re: [Freesurfer] Problem about Surface-based Registration

2014-03-19 Thread yufeng huang
l you need > to do is run mri_vol2surf for each individual, then map the resulting > overlays to fsaverage with mri_surf2surf > > > cheers > Bruce > > > On Wed, 19 Mar 2014, yufeng huang wrote: > > Hi Bruce, >> What does" rerun the registration - just use

[Freesurfer] How to set the -retinotopy number in mkanalysis-sess due to different cycle time in the eccen and polar

2013-04-18 Thread yufeng huang
Dear Doug, I want you could give me some guidances with my retinotopic analysis. Eccen run: TR 2 Ncycles 6, 64 sec per cycle, all scan 384 sec. Polar run: TR 2, then follow Ncycles 10, 32 sec per cycle, all scan 320 sec. I write the rtopy.par: stimtype polar diretion neg ncycles 10 and s

[Freesurfer] How to show the result with more color by using tksurfer?

2013-05-07 Thread yufeng huang
In my study, I have to show more than 10 functional condition with different colour, I want to know how to define a certain colour in a certain functional condition, and show it using tksurfer. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu ht