[Freesurfer] Negative eTIV

2022-03-23 Thread lqcheng2017
External Email - Use Caution Dear experts,I extracted the eTIV using the mri_segstats, but it showed negative value. How could I solve this problem?Thank you very much.cmdline mri_segstats --subject Gelb --etiv-only UseRobust  0atlas_icv (eTIV) = -2105 mm^

[Freesurfer] Wrong thickness values with mris_anatomical_stats

2022-04-12 Thread lqcheng2017
External Email - Use Caution Dear experts, I thied to calculate measures using mris_anatomical_stats. All the measures seems right excepted that the thickness is 0. I noticed a error as follows: MRISreadCurvature: could not open /dat02/subjec

Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats

2022-04-12 Thread lqcheng2017
: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of lqcheng2017 Sent: Tuesday, April 12, 2022 9:09 AM To: freesurfer Subject: [Freesurfer] Wrong thickness values with mris_anatomical_stats   External Email - Use Caution Dear experts,   I thied to calculate measures using

Re: [Freesurfer] Wrong thickness values with mris_anatomical_stats

2022-04-13 Thread lqcheng2017
I think you mean “th3” not “thr3”. It is interpreting it as an option to use a different thickness file (specified by the next thing on the command line, which is “-mgz”.   Cheers Bruce   From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of lqcheng2017 Sent: Tuesday, April 12, 2022 11: