[Freesurfer] failure of qdec

I'm running stable version of freesurfer 4.05 on 64 bit ubuntu 7.10. Every time when I tried to run the qdec, it generated the error message below. Reading /apps/freesurfer/freesurfer/lib/tcl/tkUtils.tcl Using /apps/freesurfer/freesurfer/lib/tcl/fsgdfPlot.tcl X Error of failed request: BadMatc

[Freesurfer] deflate compression support

I'm trying to make a monkey template using mris_make_template. So far, every time I run the mris_make_template, I get this error: monkey.tif: Deflate compression support is not configured. TiffWrite: TIFFWriteScanline returned error ___ Freesurfer mailin

[Freesurfer] Is there any easy way to make freesurfer work on animal data?

Is there any easy way to make freesurfer work on animal data? Such as monkey or mouse. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] gca file format

I got some question about gca file format. What does totaltraining means? GIBBS_NEIGHBORS is more 6 neighboring voxels. What is relationship between them? From 1:6 , which one is left, right etc? thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.

[Freesurfer] How to analysis animal data

I know someone here have successfully apply freesurfer on monkey. Do you mind to describe how you can do that? Freesurfer is closely related to human atlas. If you need to apply it on animal, like monkey, do you need to contruct a monkey atlas? Anything besides atlas that need to take care? than

[Freesurfer] Question about functional analysis on freesurfer

I know in freesurfer, the functional statistical analysis is performed on fsl. Could I use freesurfer to analysis the functional data instead of fsl? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/list

[Freesurfer] Preproc-sess failed for tutorial data

I followed the Fsfasttutorial to learn fsfast. But when I run preprocessing (preproc-sess -s mgh-101.1 -fwhm 5), I always get following error message /san1/acat/free/fun/fsfast-tutorial/fb1-preproc-study/mgh-101.1 cat: seq.info: No such file or directory cat: seq.info: No such file or directory ca

[Freesurfer] Problem met on fsfast tutorial data

I followed the Fsfasttutorial to learn fsfast. But when I run tkregister-sess -s mgh-101.1 -regheader, I always get such error message tkregister-sess logfile is /san1/acat/free/fun/fsfast-tutorial/fb1-preproc-study/log/tkregister- sess.log -

[Freesurfer] Ubuntu and freesurfer

Can freesurfer be installed in Ubuntu? thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Question on fs-fast

I'm trying to use fs-fast to analysis the PET data, but found that the first level analysis is specially designed for fmri. Is there any way to use fs-fast to analysis the PET data? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.n

[Freesurfer] how to apply transformation into other dataset?

I have some functional data coregistered to MRI, is it possible to apply linear and nonlinear transformation that we got at MRI recon-all to those functional data? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu

[Freesurfer] Create thickness map

Hello, Is it possible to create a thickness map and use functional image's value to replace thickness value? Thanks, Ines ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] problem on mri_vol2surf

I have tried to map the functional volume onto MRI surface functional image has been coregistered with MRI (voxel size is resample to same size) Here is the command mri_vol2surf --reg forig.mgz --trgsubject 003_S_1257 --hemi lh --surf inflated --surfreg lh.sphere.reg --out lh.fsurf.mgh --srcreg

[Freesurfer] Question about functional analysis

When we use freesurfer to do functional analysis(such as PET), do we need to account for global mean? thanks ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] error while loading shared libraries:libtiff.so.3

I'm using 64 bit Ubuntu and installed freesurfer-Linux-rh9-stable-pub-v4.0.5-full.tar.gz Everything worked fine when I tested the installation with tkmedit and tksurfer. I then ran recon-all and got error

[Freesurfer] Where can I find long_mris_slopes

I installed freesurfer 5.0 and want to use long_mris_slopes to prepare the longitudinal data but couldn't find the command. Where can I find it? thanks Lan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailma