[Freesurfer] total wm volume calculation

Dear FreeSurfer Expert, i am trying to generate the total wm volume using mris_wm_volume ,but this value is different from what i get using mirs_volume ?h.white, could you explain the differences between these two commands. and which is the best representation of the surface based total wm vo

[Freesurfer] how to convert the *.annot to *.gii

Hi, dear experts, In freesurfer , is there a way to convert the" *h.aparc.annot" file to Gifti file format so that caret can recognize it. thanks yuning ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailma

[Freesurfer] skull strip on raw data

hi,experts, is there a way to use -skullstrip of freesurfer on my raw data (.mgz format) without any correction,i.e , intensity correction , normalization ? thanks a lot yuning ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mai

[Freesurfer] calculate the surface area of pial surface using mris_anatomical_stats

Hi,experts, I am trying to get the total surface area of pial surface using the following command,but it seems the default surface for this command is white matter surface, is there any parameters i could change to get the information from pial surface ? mris_anatomical_stats -l lh.cortex.la

Re: [Freesurfer] calculate the surface area of pial surface using mris_anatomical_stats

Does the surface area calculated here include the non-cortical area along the medial wall ? Thank you very much. From: Michael Harms [mha...@conte.wustl.edu] Sent: Thursday, September 30, 2010 5:24 PM To: Zhang, Yuning Cc: freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] calculate the surface area of pial surface using mris_anatomical_stats

Thanks, it is really helpful !! best yuning From: Zhang, Yuning Sent: Thursday, September 30, 2010 6:23 PM To: Michael Harms Cc: freesurfer@nmr.mgh.harvard.edu Subject: RE: [Freesurfer] calculate the surface area of pial surface using