[Freesurfer] Fwd: Error of fsaverage unknown during mri_glmfit

2017-01-12 Thread Xiuyi Wang
Hello FreeSurfer Developers, I am attempting to repeat the group analysis with the tutorial data on FreeSurfer website, as described on the FsTutorial/GroupAnalysis ( https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis). But I received an error message when running the mri_glmfit co

[Freesurfer] Fwd: FreeSurfer group analysis visualize data

2017-02-10 Thread Xiuyi Wang
encountered this problem, but it has not been solved. Could you please tell me the solution of the problem? Thank you for your suggestion. Best. Xiuyi Wang ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman

Re: [Freesurfer] Fwd: FreeSurfer group analysis visualize data

2017-03-02 Thread Xiuyi Wang
works on 6.0 >> >> On 2/10/17 11:57 AM, Xiuyi Wang wrote: >> >> Hi, >> >> >> I am learning GroupAnalysis using FreeSurfer 5.3 on Linux system. >> >> >> I followed the detailed instruction on the tutorial website. >> >> https

Re: [Freesurfer] Fwd: FreeSurfer group analysis visualize data

2017-03-02 Thread Xiuyi Wang
lly after that. > This has been fixed in v6. > > > On 03/02/2017 11:23 AM, Xiuyi Wang wrote: > > Hello Bruce, > > > > Thank you for your reply. > > > > I have tried to delete “:annot_outline=1: before andthe command lines > are: > > > > fr

Re: [Freesurfer] Fwd: FreeSurfer group analysis visualize data

2017-03-02 Thread Xiuyi Wang
received another error message: Did not find any volume geometry information in the surface. So I still can not view the data. Thanks. Xiuyi On 2 March 2017 at 16:01, Douglas N Greve wrote: > You can use that command, just remove annot_outline=1: > > > On 03/02/2017 07:18 AM, Xiuy

Re: [Freesurfer] Fwd: FreeSurfer group analysis visualize data

2017-03-02 Thread Xiuyi Wang
Hello Bruce, Thank you so much. I will try later. Xiuyi On 2 March 2017 at 17:11, Douglas N Greve wrote: > Click the button that says to show the annotation in outline (since you > could not load it in outline mode > > > On 03/02/2017 11:50 AM, Xiuyi Wang wrote: > > Hi

[Freesurfer] mris_convert Segmentation fault.

2018-04-24 Thread Xiuyi Wang
solve this problem? I also tried this command and it works well, suggesting I can use mris_convert smoothly. mris_convert -v lh.white lh.white.neighbors.asc # Many thanks in advance, Xiuyi Wang ___ Freesurfer mailing list Freesurfer@nm