[Freesurfer] dt_recon error

2014-05-27 Thread Weber, Wade (weberw)
Hi all, I have been trying to work with DTI data in FreeSurfer for the first time. We acquire our data on a 4T Varian and reconstruct into AFNI format (BRIK/HEAD files). I set up the bval and bvec files successfully and ran the "dt_recon" script. It seemed to run fine until I got an fslregist

Re: [Freesurfer] dt_recon error

2014-05-28 Thread Weber, Wade (weberw)
Greve Sent: Tuesday, May 27, 2014 6:45 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] dt_recon error Did it actually fail? If not, does the registration look ok? That msg should just be a warning doug On 05/27/2014 02:06 PM, Weber, Wade (weberw) wrote: > > Hi all, >

Re: [Freesurfer] dt_recon error

2014-05-28 Thread Weber, Wade (weberw)
and the registration? On 05/28/2014 08:46 AM, Weber, Wade (weberw) wrote: > Hi Doug, > > It ran completely through to the end, but when I open up and inspect the data > there is nothing there except for a few white/grey voxels. > > Wade > > -Original Message-