Hi,
I am trying to compute gyrification index step by step for my dataset using the
guidelines outlined on the website to compute lgi. I'm stuck at the step of
mri_path2label command. What is the exact command to create a?h.pial.*.label
file from?h.pial.*.path and?h.pial.*.center file?
mri_pat
Hello all,
Is there a way to read ?h.smoothwm.nofix using freesurfer_fread3() command in
matlab? The question that I want to ask really is ?h.smoothwm.nofix should
essentially have the same file format as ?h.pial (but I may be wrong) because
?h.*.pial.asc and ?h.*.nofix.asc both have vertices a
11 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] reading ?h.smoothwm.nofix
Hi Virendra
I think you can use read_surf.m for any of the binary (not named *.asc)
surfaces.
cheers
Bruce
On Tue, 29 Apr 2014, Virendra Mishra wrote:
>
> Hello all,
>
>
>
>
2014, Virendra Mishra wrote:
>
> Hello all,
>
>
>
> Is there a way to read ?h.smoothwm.nofix using freesurfer_fread3()
> command in matlab? The question that I want to ask really is
> ?h.smoothwm.nofix should essentially have the same file format as
> ?h.pial (but
] on behalf of Bruce Fischl
[fis...@nmr.mgh.harvard.edu]
Sent: Tuesday, April 29, 2014 8:52 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] reading ?h.smoothwm.nofix
Hi Virendra
Is that our function? I haven't heard of it. Have you tris read_surf?
Bruce
> On Apr 29, 2014, at 4:16 P
9 Apr 2014, Virendra Mishra wrote:
> Hi again!
>
> I tried read_surf() with ?h.smoothwm.nofix surface file and it throws an
> error..essentially still to do with magic number. Any help is greatly
> appreciated.
>
> Thank you.
>
> Sincerely,
>
> Virendra.
>
> -
Hi again,
I used mris_convert *.asc my_name and it worked!
Is this correct?
Thank you,
Virendra
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Virendra Mishra
Sent: Wednesday, April 30, 2014 3:40 PM
To
, that's it
Bruce
On Wed, 30 Apr 2014, Virendra Mishra wrote:
> Hi again,
>
> I used mris_convert *.asc my_name and it worked!
>
> Is this correct?
>
> Thank you,
>
> Virendra
>
> -Original Message-
> From: freesurfer-boun...@nmr.m
.smoothwm-outer-smoothed to get a
sense of what you are measuring.
Best,
Marie
On Apr 30, 2014, at 5:39 PM, Virendra Mishra
mailto:virendra.mis...@utsouthwestern.edu>>
wrote:
Hi Marie,
The surface does come after running recon-all but it is not the actual .pial
file. It is actually l
