[Freesurfer] tkregister2

2006-01-03 Thread Vasanth Pappu
Hi, I am using tkregister2 to register two perfusion volumes. I can adjust the brightness of the movable volume, but don't know how to adjust brightness for the target volume. Is this possible? Thanks, Vasanth -- ___ Freesurfer mailing list Freesu

[Freesurfer] -legacy flag

2006-02-13 Thread Vasanth Pappu
Hi, I started to run an old subject through autorecon1 and 2. I used the -legacy flag. However, I still got the error below, saying that I need some *mgz files in the orig/ directory. I thought -legacy would do this conversion. The orig/ had a COR volume, but the error said to have a 001.mgz

[Freesurfer] stable3 vs. stable-pub

2006-03-10 Thread Vasanth Pappu
Hi, in /usr/local/freesurfer/, there is stable3 and stable3-pub. What is the difference between these two; our group is interested in freezing a copy but not sure which one to pick. Thanks, Vasanth Pappu -- ___ Freesurfer mailing list Freesurfer

[Freesurfer] norm.mgz

2006-03-24 Thread Vasanth Pappu
Hi, I am using recon-all and the norm.mgz's so far are only about half the brain. I checked the input volumes and looked though the output to std and everything seemed fine, so I am not sure what to do: on machine vader source /usr/local/freesurfer/nmr-std-env setenv SUBJECTS_DIR /autofs/s

Re: [Freesurfer] norm.mgz

2006-03-24 Thread Vasanth Pappu
nerate it? Bruce On Fri, 24 Mar 2006, Vasanth Pappu wrote: Hi, I am using recon-all and the norm.mgz's so far are only about half the brain. I checked the input volumes and looked though the output to std and everything seemed fine, so I am not sure what to do: on machine vader source