Hi there Freesurfer,
I am running into a seg fault while running mri_robust_template on
freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 on a Centos6.2 build.
Thinking that this may perhaps be an OS-related issue, I tried to download
FS binaries from
http://www.freesurfer.net/pub/dist/freesurfer/
Hi FreeSurfer,
I have two images. One MPRAGE (1x1x1mm) and a T1-weighted (0.682x0.682x3mm)
image used for CBV mapping. We have run FS, with hippocampal subfields on
the MPRAGE and would now like to transform the posterior probability maps
to the T1-weighted CBV space.
I have been using
1) mri_vol2
need to convert the reg to lta (using tkregister2) and then you can
> use mri_concatenate_lta .
>
> Cheers, Martin
>
>
>
> On Tue, 2012-07-10 at 17:36 -0400, Usman Khan wrote:
> > Hi FreeSurfer,
> > I have two images. One MPRAGE (1x1x1mm) and a T1-weighted
> >
"_to_pregado.lta "$i"
hc_subfields/final/final_"$fname".mgz;
done
Thanks,
Usman
On Jul 10, 2012, at 10:40 PM, Martin Reuter
wrote:
Hi Usman ,
Try validating each step by applying each transform. I usually use
mri_convert -at
For it.
Best Martin
Usman Khan wrote:
Hi
Hi Lijie (cc to mailing list),
I wrote a script to do just this in July. Here is a link to a tar file. It
requires knowledge of matlab and bash, but is pretty straight forward. It
https://www.dropbox.com/s/s1f78j2ozv1gw8q/subfield_to_ROI.tar.gz
a) transforms the subfield probabilities to nu.mgz
