[Freesurfer] mri_vol2surf

2012-09-10 Thread Tuomas Tolvanen
We need the description of sampling from 3D data on the surface (mri_vol2surf). We are specifically interested how the position is determined in 3D, when the fraction/distance from wm surface is announced. Is it e.g. the normal from one node (resulting in some overlap of 3D projections at the botto

[Freesurfer] Flattened data

2012-02-06 Thread Tuomas Tolvanen
Dear surfers, Using [faces verts] = freesurfer_read_surf(surface) gives me the face list and vertices coordinates. I assume that using different surface (e.g. lh.white and lh.sphere) changes only the coordinates and the face list remains the same (?). What about with flattened patch? I convert

Re: [Freesurfer] Flattened data

2012-02-09 Thread Tuomas Tolvanen
ascii file is: > > > > . > . > . > > where all the indices are 0-based, and the entries are the 3 > vertices that make up that triangular face. Note that *only* the faces and > vertices that have not been removed by cutting are in the patch file. > > cheers > Bruce > > >

Re: [Freesurfer] Flattened data

2012-02-10 Thread Tuomas Tolvanen
ded from the patch you can't just compare say the 5th > faces in each - you have to look up the index (given in the patch file) and > use that to find the corresponding face in the full surface file. > > cheers > Bruce > > > On Thu, 9 Feb 2012, Tuomas Tolvanen wrote: > &

[Freesurfer] Logic behind mri_vol2surf

2011-05-05 Thread Tuomas Tolvanen
Dear freesurfer experts, I was wondering that what is the logic or technique how mri_vol2surf works? I mean that I have an spmT-image that contains T-values for voxels and I want to visualize these activations on a surface. The number of voxels with value > 3 is ~60. When I check the number of ve