[Freesurfer] AAL Segmentation with Freesurfer

External Email - Use Caution Dear all, Is there a possibility to segment a brain with freesurfer to an AAL Atlas. So that I get the volume and amount of voxel for all the ROIs of the AAL Atlas? Best, Steph ___ Freesurfer mailing list

[Freesurfer] Recon-all with Tumor lesion

External Email - Use Caution Dear all, I want to process brains with tumor lesions with the recon-all -all command. Recon-all (freesurfer version 6) gets always stucked when calling the function mris_fix_topology. It used to work with freesurfer version 4.5, but I still want to

[Freesurfer] -nofix topology command

External Email - Use Caution Dear all, I want to run recon-all with the -nofix command, so that no fix of the topology is done, because it takes too much time or never finishes. Especially these commands in the recon-all.log file never finish. PIDs (232383 232386)… But sometime