[Freesurfer] if: Expression Syntax - preproc-sess with -nomc option

External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to run preproc-sess with -nomc option preproc-sess -s subj -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -force if: Expression Syntax. This error occurred before to create

[Freesurfer] if: Expression Syntax - preproc-sess

External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to run preproc-sess with -nomc option preproc-sess -s subj -surface fsaverage lhrh -fwhm 0 -nomc -mni305 -fsd rest -per-run -sliceorder up -force if: Expression Syntax. This error occurred before to create

Re: [Freesurfer] if: Expression Syntax - preproc-sess with -nomc option

External Email - Use Caution Thank you. Stefano Binarizing based on threshold min1e-09 max+infinity binval1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 149926 values in range Counting number of voxels in first frame Found 149925 voxels in final

Re: [Freesurfer] if: Expression Syntax - preproc-sess with -nomc option

t; > Best, > > Yujing > > From: freesurfer-boun...@nmr.mgh.harvard.edu > On Behalf Of Stefano Delli Pizzi > Sent: Tuesday, February 13, 2024 4:32 AM > To: Greve, Douglas N.,Ph.D. ; Freesurfer support list > > Subject: Re: [Freesurfer] if: Expression Syntax

Re: [Freesurfer] if: Expression Syntax - preproc-sess

Lun 26 Feb 2024 18:46:32 CET /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/003/masks/brain.fsaverage.rh.pr.nii.gz does not need updating /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA/091223sbj01m_tp1/rest/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 091223

Re: [Freesurfer] if: Expression Syntax - preproc-sess

>> /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject >> fsaverage -stc up -update ) >> set cmd = ( rawfunc2surf-sess -fwhm 0 -s 091223sbj01m_tp1 -d >> /Users/stefano/Desktop/MODAFINIL/rs-fMRI_AROMA -fsd rest -trgsubject >> fsaverage -stc up -update )

Re: [Freesurfer] if: Expression Syntax - preproc-sess

External Email - Use CautionThe entire terminal output is attached.Thanks! preproc-141696-rest.log Description: Binary data Il giorno 8 mar 2024, alle ore 15:56, Douglas N. Greve ha scritto:entire terminal output_

Re: [Freesurfer] if: Expression Syntax - preproc-sess

:54, Douglas N. Greve > ha scritto: > > Hi Stefano, I think I found and fixed the problem. Can you try these? > > On 3/19/2024 7:30 AM, Stefano Delli Pizzi wrote: >> External Email - Use Caution >> >> Hi Doug, >> >> The r

Re: [Freesurfer] if: Expression Syntax - preproc-sess

External Email - Use Caution My command line is fcseed-sess -s 156484 -cfg wm.config. I do not understand where I'm making an error or if a change is needed. Thanks Stefano > Il giorno 21 mar 2024, alle ore 14:35, Douglas N. Greve > ha scritto: > > -funcstem f.even __

Re: [Freesurfer] if: Expression Syntax - preproc-sess

External Email - Use Caution II have copied the f.nii.gz file (which contains the functional data filtered by AROMA) and renamed it as 'fmcpr.nii.gz’. Do you agree? The scripts run fine. Stefano > Il giorno 21 mar 2024, alle ore 17:01, Stefano Delli Pizzi >

Re: [Freesurfer] fspalm error

External Email - Use Caution I have the same error that doesn't resolve with --mgh or mgz. warning: excluding contrast file /Volumes/mnu/MRI/XXX/NIFTI/FreeSurfer/rs-fMRI_AROMA/G3V0_Comparison/fc.MDseed.surf.rh/MD/G3V0_PALM.glmdir/group.effect/C.dat since it has multiple rows ER

[Freesurfer] Maps from fsLR system (32, 492 vertices) to fsaverage5

External Email - Use Caution Dear, We are using the Magicc Maps (https://github.com/kwagstyl/MAGICC). The maps are in fsLR system (32,492 vertices). How can we register them in fsaverage5? Thanks Best regards Stefano ___ Freesurfer mai