Hi,
I am attempting to view single anatomical ROI (say Right-Hippocampus)
overlaid on MRI image using freeview.How can I achieve this?
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/free
External Email - Use Caution
Hi,
I would like to get CSF/GM/WM segmentations from aseg.mgz or in other words
from labeled brain. Can I do that with mri_compute_volume_fractions ? Also, I
am not sure about the parameters to supply,
and ?
Could Someone point me to some documen
whatever you
pick - it will be prepended to the files that are written with the volume
fractions.
cheers
Bruce
On Wed, 25 Apr 2018, Srinivasan, Dhivya wrote:
>External Email - Use Caution
>
> Hi,
>
> I would like to get CSF/GM/WM segmentations from aseg.mgz or in othe
that will
internally create an identity matrix). The output stem is whatever you
pick - it will be prepended to the files that are written with the volume
fractions.
cheers
Bruce
On Wed, 25 Apr 2018, Srinivasan, Dhivya wrote:
>External Email - Use Caution
>
> Hi,
>
> I wo
s the full command and all screen output from it in
the future.
cheers
Bruce
On
Wed, 25 Apr 2018, Srinivasan, Dhivya wrote:
>External Email - Use Caution
>
> Sorry for bothering with more questions!
>
> I am getting an error saying ,
>
> mri_compute_volume_fractions: c
2018, Srinivasan, Dhivya wrote:
>External Email - Use Caution
>
> Thanks Bruce!
>
> I even tried with --regheader
>
> mri_compute_volume_fractions mri/aseg.mgz --o test --regheader identity.nofile
>
> It gives me below error,
>
> arg = 6
> re
the aseg is the default name. You are putting it in the wrong place and it
thinks the aseg is a registration file
On Thu, 26 Apr 2018, Srinivasan, Dhivya wrote:
>External Email - Use Caution
>
> I am getting same Error with many permutations of arguments,
>
> mri_compute_v
header bruce.dev
bruce.dev/mri/norm.mgz
outstem test
regfile (null)
regtype 0
segfile aseg.mgz
.
.
.
On Thu, 26 Apr 2018, Srinivasan, Dhivya wrote:
>External Email - Use Caution
>
> mri_compute_volume_fractions --o test --regheader
> unknown option --o
>
> If I am not giv
.dev/mri/norm.mgz
outstem test
regfile (null)
regtype 0
segfile aseg.mgz
.
.
.
On Thu, 26 Apr 2018, Srinivasan, Dhivya wrote:
>External Email - Use Caution
>
> mri_compute_volume_fractions --o test --regheader
> unknown option --o
>
> If I am not giving any input bef
