[Freesurfer] Questions for PetSurfer

2019-11-15 Thread Soo-Jong Kim
regions to make rbv.nii.gz method in PetSurfer? Can I use the rbv.nii.gz as partial volume corrected PET from RBV method? If not, Please tell me what is the correct command of mri_gtmpvc. I need only partial volume corrected PET using RBV method. Sincerely

[Freesurfer] PetSurfer questions

2019-11-25 Thread Soo-Jong Kim
method. Sincerely, Soo-Jong Kim ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] PetSurfer questions

2020-01-30 Thread Soo-Jong Kim
External Email - Use Caution I ran gtmseg for my partial volume correction 1. but I have a question. What regions are for the detail?? in this option. mri_gtmpvc --default-seg-merge. I searched mri_gtmpvc --help but it is default schema for merging ROIs. So I wanna know what reg

Re: [Freesurfer] PetSurfer questions

2020-02-03 Thread Soo-Jong Kim
External Email - Use Caution Thank you, Dr. Greve I checked all about your comment. I have questions more. 1. I found that volumes or counts in gtm.stats.dat are for native PET space. If co-registered PET onto corresponding MRI(i.e. MRI space) is available using rbv.nii.gz from m

Re: [Freesurfer] PetSurfer questions

2020-02-09 Thread Soo-Jong Kim
External Email - Use Caution Thank you, Dr. Greve I checked all about your comment. I have questions more. 1. I found that volumes or counts in gtm.stats.dat are for native PET space. If co-registered PET onto corresponding MRI(i.e. MRI space) is available using rbv.nii.gz from m

Re: [Freesurfer] PetSurfer questions

2020-02-09 Thread Soo-Jong Kim
External Email - Use Caution Thank you, Dr. Greve I checked all about your comment. I have questions more. 1. I found that volumes or counts in gtm.stats.dat are for native PET space. If co-registered PET onto corresponding MRI(i.e. MRI space) is available using rbv.nii.gz from m

Re: [Freesurfer] PetSurfer questions

2020-02-20 Thread Soo-Jong Kim
External Email - Use Caution *Thank you Dr. Greve for your answer* I checked all about your comment. I have questions more. 1. I found that volumes or counts in gtm.stats.dat are for native PET space. If co-registered PET onto corresponding MRI(i.e. MRI space) is available usin

Re: [Freesurfer] PetSurfer questions

2020-02-22 Thread Soo-Jong Kim
External Email - Use Caution Thank you Dr.Greve. I applied to rbv.nii.gz volume to anatomical space. You said, bbpet2anat.lta. using mri_vol2vol but I tested. registration using bbpet2anat.lta was not correct on native T1 space. So I tested rbv2anat.lta for registration. that w