[Freesurfer] FLASH and MPRAGE sequences for segmentation on a GE 3.0T

Freesurfer, We recently gained access to a new GE Discovery MR750w 3.0T GEM MRI with a 24 channel headcoil. Because this system is located at a nearby hospital and is used clinically, we do not have a research agreement with GE in place and, therefore, cannot edit the default pu

[Freesurfer] watershed surface to volume rendering

Freesurfer, We have scans that have recon-all completed. Following recon-all, we completed watershed (under the MNE toolbox) to extract skull and scalp from the T1 scans. The outputs of this algorithm are outer brain, inner skull, outer skull and outer scalp surfaces. We are part

[Freesurfer] watershed surface to volume rendering repost

Freesurfer, Sorry for the repost, but I did not get any further details: We have scans that have recon-all completed. Following recon-all, we completed watershed (under the MNE toolbox) to extract skull and scalp from the T1 scans. The outputs of this algorithm are outer brain, i

Re: [Freesurfer] watershed surface to volume rendering repost

olean operations on them to get the volumes you want, but it should be pretty easy I think. cheers Bruce On Tue, 2 Sep 2014, Sherwood, Matt wrote: > > Freesurfer, > >     Sorry for the repost, but I did not get any further details: > >   > > We have scans