Hi all,
I was able to work around this by providing the path to lh.thickness and not
to the .label. (Paths relative since I've cd'd to subjects/myguy/label
before running it. )
ERROR'd attempt:
Cmd: mri_segstats --i lh.thickness --slabel lh ./lh.BA3a.label --id
1 --sum table.dat
Hiya,
I'm trying to download a copy of your latest dev build for
Freesurfer 5.3 - I'm interested in getting the latest build for Freeview for
Linux/Ubuntu or Neuro-Debian - but I seem to keep getting an "unreachable site"
message?
ftp://surfer.nmr.mgh.harvard.ed
FSv5.1 seems to run fine on 64-bit Mountain Lion, as far as I can tell, but
I have not tried GEMS or TRACULA just yet... (I upgraded before installing,
in case that matters.)
I use XQuartz for tkmedit, freeview, fslview, etc.
So far so good!
~ShannonB
-Original Message-
From: freesur
Hi Anastasia,
I am trying to run Tracula for the first time in our lab and
I'm getting errors during step 2 that seem to involve how the program wants
to be launched via grid. I've attached the configuration file I'm using and
the error message is below...
_
$trac-al
iginal FSL version so that it
runs on our clusters.
In either case, trac-all is meant to always be run from the command line,
whether you're on a personal computer (where is runs jobs serially) or a
cluster (where it submits them as jobs using qsub). But probably some
editing will
x27;t use
to save the mean_dsamples.nii.gz, but that was a while ago.
How quickly it runs depends on the size of the brain mask, so I'd check
that that's ok too.
a.y
On Wed, 9 Nov 2011, Shannon Buckley wrote:
> Hi Anastasia,
>
> It turns out that I was NOT able to run
Hi Tracula team,
I have just successfully processed my first scan through all
the Tracula steps! Though, I have to say it could have gone much smoother /
quicker if the documentation on the wiki were a little more up-to-date. I
realize it's an ongoing struggle to keep documenta
