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Hello Respected Community,
I generated a label file using the command
mri_vol2label --c $SUBJECTS_DIR/bert/mri/brainstemSsLabels.v10.mgz --id 173
--l midbrain.label
the content of the label file is probably in RAS format. My question is how
to locate a
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Dear Freesurfers,
I recently started working on an brain sMRI related project. I have a minor
(may be a major) issue.
when I generate label files for a tissue e.g midbrain by using the command
mri_vol2label --c $SUBJECTS_DIR/bert/mri/brainstemSsLabels.
AM Douglas N. Greve
wrote:
>
>
> On 4/15/2020 11:17 AM, Safi Ullah . wrote:
>
> External Email - Use Caution
> Dear Freesurfers,
>
> I recently started working on an brain sMRI related project. I have a
> minor (may be a major) issue.
> when I generate label file
transformation do i
need to correctly map the coordinates from label file over to mri.vol
matrix?
Warm Regards,
Safi
On Mon, Apr 20, 2020 at 12:12 AM Safi Ullah . wrote:
> Thank you Doug,
> I tried all the transformation matrices (although as per case 1 of the
> referred link, i need
t;
> Tim
>
> --
> Dr. Tim Schäfer
> Postdoc Computational Neuroimaging
> Department of Child and Adolescent Psychiatry, Psychosomatics and
> Psychotherapy
> University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
>
>
> > On April 20, 2020 at 11:37 AM &q
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Hello Freesurfer expert Users,
My question is specifically from radiologists on the group,
1. Where to find the mickey mouse sign? i mean which region can grow this
sign?
2. While scrolling trough MRI volume in axial direction, how to decide, its
now a
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Dear Alex
You may check *brain.map*
Regards
Safi
On Wed, Apr 29, 2020 at 6:24 PM Alex Mihai wrote:
> External Email - Use Caution
>
> Hi guys!
>
> I have followed the virtual machine setup for virtual box freesurfer
> installation.but it ask
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Dear Freesurfer,
*Q.1*: The colors of FreeSurferColorLUT.txt corresponds to which mgz file?
I wanted to extract Substancia-Nigra but with reference to a conversion,
held in 2019,
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg63560.html,
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Dear List,
I installed version 7 into a directory named 'freesurfer' where there are
already Verion 6 and Version 7(beta) is installed.
My OS is 'Ubuntu_FS_600_700b1_TutorialData'
"/usr/local/freesurfer/6.0.0-1"
"/usr/local/freesurfer/7.0.0-0.1b1"
So I
ing
> on 13 subjects, then there is something systematically wrong. What kind of
> input do you have? Eg, MPRAGE? What is the resolution? Is it whole brain?
>
> On 5/19/2020 11:17 AM, Safi Ullah . wrote:
>
> External Email - Use Caution
> Dear Freesurfer,
>
> Using
o, the raw image size is 256x146x256
and voxal size is 1x1.2x1 mm
i downloaded as T1 (ticked button) from PPMI, and also visually looks ok
Regards,
Safi
On Wed, May 20, 2020 at 11:27 AM Douglas N. Greve
wrote:
> Have you looked at the images? Are they T1-weighted? What is their
> resolution
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