[Freesurfer] Perirhinal Cortex

Hi All, I want to extract the volume of the perirhinal cortex from a group of subjects processed on fs5.1. Is it possible to run the balabel on these subjects in 5.2 without running the full recon-all for them? If it is possible, is it advisable not to run the full recon-all on 5.2 with them first

[Freesurfer] mri_anatomical_stats segmentation fault

Hi All, I'm running "mris_anatomical_stats" with a few manually defined labels. For a few of my subjects, I am getting the error: "Segmentation fault" on one of the labels. However, the other manually defined labels process without any errors on these same subjects. For example, I am running "mri

Re: [Freesurfer] mri_anatomical_stats segmentation fault

that many veritices, then that could cause the problem. > doug > > > > On 05/28/2013 10:33 AM, Rob Tennyson wrote: > >> Hi Doug, >> >> Attached are the three labels I'm having an issue with (each with a >> different subject). These are built from areas

Re: [Freesurfer] mri_anatomical_stats segmentation fault

lh.white" file. On Tue, May 28, 2013 at 1:52 PM, Douglas N Greve wrote: > how did you create the label? If it has more vertices than the subject has > then something is very wrong. You don't always get segfaults, you might > just get garbage and never know it. > doug &g

Re: [Freesurfer] mri_anatomical_stats segmentation fault

help! On Tue, May 28, 2013 at 2:06 PM, Douglas N Greve wrote: > The label that you sent applies to fsaverage. If you want to use it on a > different subject, you should map it to that subject with mri_label2label > doug > > > > > On 05/28/2013 03:00 PM, Rob Tennyson wrote: &

[Freesurfer] Hippo-subfield fault

)* * * Let me know if more info is needed, I am not sure if this is a common error or not. I saw a similar question was asked in November but could not find a solution for it. Thanks for any help! Rob -- Rob Tennyson Research Coordinator, Bar Lab Massachusetts General Hospital Phone: 61

[Freesurfer] Problem viewing hippo-subfields

s: "Failed to load posterior_left_*" and "Failed to load posterior_right_*" The folder (bert/mri) has all of the correct segmentation files. Is there something I am doing wrong or some way to troubleshoot this problem? Thanks! Rob -- Rob Tennyson Research Coordinator,

[Freesurfer] kvlQuantifyHippocampalSubfieldSegmentations.sh

each subject's data into a text file. Thanks! Rob -- Rob Tennyson Research Coordinator, Bar Lab Massachusetts General Hospital Phone: 617-724-0413 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailma