[Freesurfer] Converting Surface Masks to Labels

Hi, I'm sorry for what seems like a trivial question. I couldn't find this answer in the tutorials or old archive. I have statistical data in the surface that I have thresholded and binarized to form a mask. I can load the mask as an overlay in tksurfer. My understanding is that you need to tur

[Freesurfer] Convert multiple analyze files to one nifti file

Hi, I have been given data that I need to put in a specific format so that it's useable to me. I know how to use mri_convert to convert between analyze and nifti. However, I need one file per run, whereas this data comes such that every frame is a separate analyze file. How do I combine them? Th

Re: [Freesurfer] Convert multiple analyze files to one nifti file

I get the message "ReadAnalyzeHeader: unsupported data type 132." On 12/2/10, Douglas N Greve wrote: > Try > > mri_concat *.img --o f.nii > > doug > > Rita Loiotile wrote: >> Hi, >> I have been given data that I need to put in a specific format so tha

Re: [Freesurfer] Convert multiple analyze files to one nifti file

ke we don't read it. You can try the FSL tools. > > doug > > Rita Loiotile wrote: >> I get the message "ReadAnalyzeHeader: unsupported data type 132." >> >> On 12/2/10, Douglas N Greve wrote: >> >>> Try >>> >>> mri_conca

[Freesurfer] MRI_concat

For a series of nifti fMRI images does it matter in what order I list the images for my input? Or does MRI_concat get the time series info from the files themselves? Sent from my iPhone ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu http

[Freesurfer] fsl tutorial data

anyone have it saved anywhere? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe

[Freesurfer] Slice Order

If my BOLD scan has 30 slices in "interleaved" series, can I assume the slice order is 1,3,5,7,9...29,2,4,6,8..30? In other words, 1:2:30,2:2:30? ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo

[Freesurfer] ASL tag-control order

Hi, How can I tell what the tag-control order of collection was for my ASL images? They were all acquired in Bay 3. I can get you other parameters if you need... ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu

Re: [Freesurfer] Slice Order

For an odd number of slices- e.g. 45- would it just be 1,3,5,...,45,2,4,...,44 for the Siemens default? On 2/9/11, Douglas N Greve wrote: > For Siemens with an even number of slices, it is generally > 2,4,6,..30,1,3,...29. This changes if there is an odd number of slices. > > d