[Freesurfer] FreeSurfer & Matlab

urfer from Matlab? It seems that the matlab files that come with freesurfer are more for reading and writing data rather than using/starting the freesurfer binaries. Thanks for your help! Best, Raghav Raghav Puranmalka Candidate B.S. Engineering | Major: Bioengineering Candidate M.S. Engineeri

Re: [Freesurfer] FreeSurfer & Matlab

es in matlab, maybe >> Thomas (ccd) can comment. As for 2, I'm not sure I understand what >> you mean. Why would you need to run freesurfer from within matlab? I >> guess you could use eval to run recon-all if you had to, but I >> wouldn't think you would need to.

[Freesurfer] Segmentation fault?

Hi all, I am running recon-all as follows: recon-all -subjid subj1 -all and (after about 4 hours of running,) get this error: 0516: dt=0.00, rms=0.507 (0.000%), neg=0, invalid=766 Segmentation fault ERROR: mri_ca_register with non-zero status 139 but continuing despite the error #--

Re: [Freesurfer] merging rh and lh surfaces

Hi all - I was trying to merge rh and lh surfaces. I succeeded after reading the mailing list archives from March 2009 found at http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg09665.html. I following this guide: you can get something like what you want with cd $SUBJECTS_DIR/subj

Re: [Freesurfer] merging rh and lh surfaces

any way of extracting the correct curv file through the process of using mris_smooth? Thanks for your help! Best, Raghav -- Raghav Puranmalka Candidate B.S. Engineering | Major: Bioengineering Candidate M.S. Engineering | Major: Bioengineering SEAS | University of Pennsylvania 630.544.1114 | ragh