Yes, attached is a screenshot of talairach.xfm. It does look brighter in
the same region that was excluded in the white/pial matter. Could this be
the problem, and what do you suggest I do? Thanks!!
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put this flag at
the very end (after I specify the glmdir, which I do at the very end),
it'll just complete the analysis as if this flag wasn't even there,
resulting in a full-brain analysis. Am I missing something here re: how to
add in this flag?
Any help would be much appreciated!
Ra
Hi Doug,
Thanks for the response. Here is my glmfit command:
mri_glmfit \
--y lh.22q_age.thickness.10.mgh \
--fsgd 22q_age.fsgd dods\
--C 22q_age_2.mtx \
--surf fsaverage lh \
--label lh.orbitofrontal.label
--cortex \
--glmdir lh.22q_age_OFC.glmdir
And here is the error message:
gdfReadHeader:
Hi Freesurfer users,
I ran a GLM vertex analysis testing an interaction between group and a task
measure, and a few clusters popped up that survived correction. I extracted
the mean thickness values at the clusters (using cache.th13.abs.y.ocn.dat)
in order to plot these interactions in graph form.
